Constraints on Fluctuations in Sparsely Characterized Biological Systems.

نویسندگان

  • Andreas Hilfinger
  • Thomas M Norman
  • Glenn Vinnicombe
  • Johan Paulsson
چکیده

Biochemical processes are inherently stochastic, creating molecular fluctuations in otherwise identical cells. Such "noise" is widespread but has proven difficult to analyze because most systems are sparsely characterized at the single cell level and because nonlinear stochastic models are analytically intractable. Here, we exactly relate average abundances, lifetimes, step sizes, and covariances for any pair of components in complex stochastic reaction systems even when the dynamics of other components are left unspecified. Using basic mathematical inequalities, we then establish bounds for whole classes of systems. These bounds highlight fundamental trade-offs that show how efficient assembly processes must invariably exhibit large fluctuations in subunit levels and how eliminating fluctuations in one cellular component requires creating heterogeneity in another.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Exploiting Natural Fluctuations to Identify Kinetic Mechanisms in Sparsely Characterized Systems.

From biochemistry to ecology, many biological systems are stochastic, complex, and sparsely characterized. In such systems, each component may respond to changes in any directly or indirectly connected components, thus requiring knowledge of the whole to predict the dynamics of the parts. Here, we address this challenge by deriving relations between properties of fluctuations that only reflect ...

متن کامل

Design and Evaluation of a Method for Partitioning and Offloading Web-based Applications in Mobile Systems with Bandwidth Constraints

Computation offloading is known to be among the effective solutions of running heavy applications on smart mobile devices. However, irregular changes of a mobile data rate have direct impacts on code partitioning when offloading is in progress. It is believed that once a rate-adaptive partitioning performed, the replication of such substantial processes due to bandwidth fluctuation can be avoid...

متن کامل

Modular networks emerge from multiconstraint optimization.

Modular structure is ubiquitous among complex networks. We note that most such systems are subject to multiple structural and functional constraints, e.g., minimizing the average path length and the total number of links, while maximizing robustness against perturbations in node activity. We show that the optimal networks satisfying these three constraints are characterized by the existence of ...

متن کامل

How the Nonextensivity Parameter Affects Energy Fluctuations

In this article, the effect of the nonextensivity parameter on the energy fluctuations of nonextensive systems is studied in two different versions of the Tsallis statistical mechanics. Once a general expression has been reported for the energy fluctuations in the second version (Tsallis work in 1988), the energy fluctuations of an ideal gas and a harmonic oscillator are studied in the second a...

متن کامل

Exploring sparsely populated states of macromolecules by diamagnetic and paramagnetic NMR relaxation.

Sparsely populated states of macromolecules, characterized by short lifetimes and high free-energies relative to the predominant ground state, often play a key role in many biological, chemical, and biophysical processes. In this review, we briefly summarize various new developments in NMR spectroscopy that permit these heretofore invisible, sparsely populated states to be detected, characteriz...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • Physical review letters

دوره 116 5  شماره 

صفحات  -

تاریخ انتشار 2016